PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721612
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 132aa    MW: 15753.6 Da    PI: 10.7407
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721612genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.62.2e-1513101298
                   HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                   F +++y++++d++++++isws  +n+++f++ ++ee+ ++ +   F  + f  F+ +L+ YgFk+vk ++          eF++k+F +g+ ell  
     676721612  13 FHERVYKLVDDPSTDSIISWSksNNSKTFIIRKPEELVRRKMLFKFYSDTFPEFISKLKFYGFKEVKGSR----------EFNNKNFVRGHPELLPA 99 
                   8899*****************6455599*********9999999999*******************9887..........89********9999977 PP

                   XX CS
  HSF_DNA-bind  97 ik 98 
                   ++
     676721612 100 MH 101
                   65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.8E-149103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.74E-1710100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.6E-181097IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-71336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-1413100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-76678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAYPDYIKGI MMFHERVYKL VDDPSTDSII SWSKSNNSKT FIIRKPEELV RRKMLFKFYS  60
DTFPEFISKL KFYGFKEVKG SREFNNKNFV RGHPELLPAM HIQAVIDRTR ARDKAELKLK  120
PKLKLKLKLK HK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415704.13e-37PREDICTED: heat stress transcription factor A-4c-like
TrEMBLV4KLB34e-31V4KLB3_EUTSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.18e-18HSF family protein